STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_1142PFAM: periplasmic solute binding protein; KEGG: rfr:Rfer_2051 periplasmic solute binding protein; Belongs to the bacterial solute-binding protein 9 family. (307 aa)    
Predicted Functional Partners:
Pnap_1143
PFAM: ABC-3 protein; KEGG: rfr:Rfer_2052 ABC-3.
  
 0.999
Pnap_1144
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_2053 ABC transporter related.
 
  
 0.990
Pnap_0107
PFAM: ABC transporter related; KEGG: rfr:Rfer_3383 ABC transporter related.
 
  
 0.866
rpsN
SSU ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
  
 0.615
Pnap_1160
PFAM: cobalamin synthesis protein, P47K; cobalamin synthesis CobW domain protein; KEGG: mag:amb2306 putative GTPase.
  
  
 0.591
Pnap_3429
PFAM: cobalamin synthesis protein, P47K; cobalamin synthesis CobW domain protein; KEGG: pol:Bpro_1063 cobalamin synthesis protein, P47K.
  
  
 0.591
rpmB
PFAM: ribosomal protein L28; KEGG: pol:Bpro_3802 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.587
Pnap_1145
KEGG: pol:Bpro_1677 putative ferric uptake regulator, FUR family.
  
  
 0.556
purL
Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate.
     
 0.523
fur
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: pol:Bpro_4610 ferric uptake regulator, FUR family; Belongs to the Fur family.
 
  
 0.493
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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