STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_1146PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_1678 ABC transporter related. (226 aa)    
Predicted Functional Partners:
Pnap_3550
PFAM: protein of unknown function DUF214; KEGG: rfr:Rfer_3187 protein of unknown function DUF214.
 
 0.950
Pnap_1153
PFAM: protein of unknown function DUF214; KEGG: pol:Bpro_3224 protein of unknown function DUF214.
  
 
 0.949
Pnap_1147
PFAM: protein of unknown function DUF214; KEGG: pol:Bpro_1679 protein of unknown function DUF214.
 
 
 0.942
Pnap_1149
KEGG: pol:Bpro_1681 hypothetical protein.
 
  
 0.802
Pnap_1145
KEGG: pol:Bpro_1677 putative ferric uptake regulator, FUR family.
  
  
 0.783
Pnap_0369
Phosphate ABC transporter ATP-binding protein, PhoT family; PFAM: Dual specificity protein phosphatase; ABC transporter related; SMART: AAA ATPase; protein tyrosine phosphatase, catalytic region; KEGG: sit:TM1040_3766 ABC transporter related; TC 3.A.1.7.1.
 
  
 0.731
Pnap_1148
KEGG: pol:Bpro_1680 hypothetical protein.
       0.724
rpsE
SSU ribosomal protein S5P; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.
  
   
 0.697
Pnap_2457
Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_0989 ABC transporter related; TC 3.A.1.4.-.
  
     0.640
rsmA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
 
 
 
 0.608
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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