STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_1191PFAM: Cupin 4 family protein; KEGG: pol:Bpro_3175 cupin 4. (413 aa)    
Predicted Functional Partners:
rplP
LSU ribosomal protein L16P; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.
    
 
 0.833
Pnap_1192
KEGG: pol:Bpro_3174 hypothetical protein.
       0.664
Pnap_1190
KEGG: pol:Bpro_3176 putative fkbp-type peptidyl-prolyl cis-trans isomerase (rotamase) protein.
       0.619
Pnap_3033
KEGG: pol:Bpro_3601 succinate dehydrogenase, cytochrome b subunit.
  
     0.506
queF
GTP cyclohydrolase I; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1).
 
    0.502
Pnap_1384
PFAM: protein of unknown function DUF615; KEGG: pol:Bpro_3288 protein of unknown function DUF615; Belongs to the UPF0307 family.
  
     0.462
Pnap_3032
PFAM: succinate dehydrogenase, cytochrome b subunit; KEGG: pol:Bpro_3600 succinate dehydrogenase, cytochrome b subunit.
  
     0.422
Pnap_0148
KEGG: pol:Bpro_0204 hypothetical protein.
  
     0.420
Pnap_2361
PFAM: DoxX family protein; KEGG: cps:CPS_0809 DoxD family protein.
 
    0.419
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.