STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vapC-2PilT protein domain protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family. (143 aa)    
Predicted Functional Partners:
Pnap_1212
Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
     
 0.792
Pnap_1822
Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
 
   
 0.792
vapC-5
PilT protein domain protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
     0.704
vapC-4
PilT protein domain protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
     0.691
Pnap_3716
Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
 
 
 
 0.616
Pnap_3715
PFAM: PilT protein domain protein; KEGG: tth:TTC0113 hypothetical protein.
  
   
 0.570
Pnap_2551
KEGG: pol:Bpro_2718 virulence-associated protein VapB-like.
 
 
 0.560
Pnap_1214
PFAM: KWG Leptospira repeat protein; KEGG: ana:all4040 unknown protein.
       0.457
Pnap_1211
KEGG: tdn:Tmden_0240 conserved hypothetical protein, putative DNA helicase.
       0.447
Pnap_3681
PFAM: SpoVT/AbrB domain protein; KEGG: mca:MCA1622 virulence-associated protein VagC, putative.
  
 
 0.433
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.