STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_1216TIGRFAM: lytic murein transglycosylase B; KEGG: pol:Bpro_3149 lytic murein transglycosylase B. (363 aa)    
Predicted Functional Partners:
Pnap_1217
PFAM: transglutaminase domain protein; KEGG: pol:Bpro_3148 transglutaminase-like.
      0.951
Pnap_1218
PFAM: protein of unknown function DUF58; KEGG: pol:Bpro_3147 protein of unknown function DUF58.
       0.774
Pnap_1219
PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: pol:Bpro_3146 ATPase associated with various cellular activities, AAA_3.
       0.710
Pnap_1826
PFAM: Aldose 1-epimerase; KEGG: xom:XOO_0261 transglycolase; Belongs to the glucose-6-phosphate 1-epimerase family.
 
      0.613
Pnap_1215
KEGG: hch:HCH_04341 hypothetical protein.
       0.596
lptD
Organic solvent tolerance protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
 
     0.572
Pnap_1220
PFAM: histone deacetylase superfamily; KEGG: pol:Bpro_3145 histone deacetylase superfamily.
       0.556
secB1
Protein translocase subunit secB; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA.
  
     0.549
Pnap_1222
PFAM: MscS Mechanosensitive ion channel; KEGG: pol:Bpro_3144 MscS mechanosensitive ion channel.
       0.510
secB2
Protein translocase subunit secB; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA.
  
     0.503
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.