STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_1217PFAM: transglutaminase domain protein; KEGG: pol:Bpro_3148 transglutaminase-like. (689 aa)    
Predicted Functional Partners:
Pnap_1218
PFAM: protein of unknown function DUF58; KEGG: pol:Bpro_3147 protein of unknown function DUF58.
  
 0.995
Pnap_1216
TIGRFAM: lytic murein transglycosylase B; KEGG: pol:Bpro_3149 lytic murein transglycosylase B.
      0.951
Pnap_1219
PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: pol:Bpro_3146 ATPase associated with various cellular activities, AAA_3.
 
   
 0.949
Pnap_0673
PFAM: Fimbrial assembly family protein; KEGG: pol:Bpro_0782 fimbrial assembly.
  
     0.764
Pnap_3879
PFAM: Peptidoglycan-binding LysM; KEGG: pol:Bpro_4640 peptidoglycan-binding LysM.
  
     0.763
Pnap_0672
TIGRFAM: type IV pilus assembly protein PilM; KEGG: pol:Bpro_0781 type IV pilus assembly protein PilM.
 
     0.754
Pnap_0675
PFAM: Pilus assembly protein, PilQ; KEGG: pol:Bpro_0784 pilus assembly protein, PilQ.
  
     0.754
Pnap_1950
PFAM: type IV pilus assembly PilZ; KEGG: pol:Bpro_2517 type IV pilus assembly PilZ.
 
     0.748
Pnap_0674
PFAM: Pilus assembly protein, PilO; KEGG: pol:Bpro_0783 pilus assembly protein, PilO.
  
     0.747
Pnap_1870
KEGG: pol:Bpro_2610 tetratricopeptide TPR_2; TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein.
  
     0.741
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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