Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Pnap_1237PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_2012 twin-arginine translocation pathway signal. (337 aa)    
Predicted Functional Partners:
Pnap_1236
PFAM: protein of unknown function DUF112, transmembrane; KEGG: pol:Bpro_2011 protein of unknown function DUF112, transmembrane.
 
  
 0.941
Pnap_3237
PFAM: protein of unknown function DUF112, transmembrane; KEGG: pol:Bpro_3880 protein of unknown function DUF112, transmembrane.
 
  
 0.843
Pnap_0604
PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_3116 twin-arginine translocation pathway signal.
  
     0.756
Pnap_1235
KEGG: pol:Bpro_2010 hypothetical protein.
  
  
 0.752
Pnap_2030
PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_1232 uncharacterized protein UPF0065.
  
     0.752
Pnap_0617
PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_1232 uncharacterized protein UPF0065.
  
     0.740
Pnap_1021
PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_3347 uncharacterized protein UPF0065.
  
     0.725
Pnap_1011
PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_1427 twin-arginine translocation pathway signal.
  
     0.724
Pnap_2663
PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_5382 uncharacterized protein UPF0065.
  
     0.697
Pnap_3148
PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_1232 uncharacterized protein UPF0065.
  
     0.658
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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