STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_1273PFAM: protein of unknown function DUF465; KEGG: cps:CPS_0008 hypothetical protein. (79 aa)    
Predicted Functional Partners:
Pnap_3780
PFAM: Cbb3-type cytochrome oxidase component; KEGG: rfr:Rfer_1932 Cbb3-type cytochrome oxidase component.
   
    0.805
Pnap_1274
PFAM: protein of unknown function DUF344; KEGG: rme:Rmet_0550 protein of unknown function DUF344.
  
    0.788
Pnap_1272
PFAM: UspA domain protein; KEGG: pol:Bpro_3459 UspA.
  
    0.696
Pnap_3517
PFAM: protein of unknown function DUF344; KEGG: pol:Bpro_4050 protein of unknown function DUF344.
   
    0.637
Pnap_2096
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: pol:Bpro_4301 4Fe-4S ferredoxin, iron-sulfur binding.
  
    0.610
Pnap_3778
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: pol:Bpro_4301 4Fe-4S ferredoxin, iron-sulfur binding.
  
    0.605
Pnap_2822
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: rfr:Rfer_1934 4Fe-4S ferredoxin, iron-sulfur binding.
  
    0.603
Pnap_0387
PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: pol:Bpro_4256 radical SAM.
   
    0.579
Pnap_3782
TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; PFAM: cytochrome c oxidase, subunit I; KEGG: rfr:Rfer_1930 cytochrome c oxidase, cbb3-type, subunit I; Belongs to the heme-copper respiratory oxidase family.
  
    0.537
Pnap_1271
PFAM: protein of unknown function DUF427; KEGG: pol:Bpro_3460 protein of unknown function DUF427.
       0.485
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.