STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_1283KEGG: pol:Bpro_3448 putative cytochrome c. (261 aa)    
Predicted Functional Partners:
Pnap_1282
PFAM: cytochrome c, class I; KEGG: pol:Bpro_3449 cytochrome c, class I.
  
 0.979
Pnap_2094
PFAM: cytochrome c, class I; KEGG: pol:Bpro_3449 cytochrome c, class I.
  
 0.845
Pnap_0715
PFAM: cytochrome c1; KEGG: pol:Bpro_0823 cytochrome c1.
 
  
 0.771
Pnap_2825
PFAM: cytochrome c, class I; KEGG: bmb:BruAb2_0829 cytochrome c family protein.
 
  
 0.761
Pnap_0713
Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
 
   
 0.638
Pnap_1284
PFAM: alpha/beta hydrolase fold; KEGG: pol:Bpro_3438 alpha/beta hydrolase fold.
       0.586
Pnap_1285
KEGG: pol:Bpro_3437 hypothetical protein.
       0.586
Pnap_0263
PFAM: cytochrome c, class I; KEGG: pol:Bpro_0336 cytochrome c, class I.
 
   
 0.581
Pnap_0714
Cytochrome b/b6, N-terminal domain protein; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
 
  
 0.573
Pnap_0885
KEGG: pol:Bpro_1252 hypothetical protein.
 
   
 0.527
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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