STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_1301PFAM: methyltransferase small; ribosomal L11 methyltransferase; KEGG: pol:Bpro_3426 methyltransferase small; Belongs to the methyltransferase superfamily. (417 aa)    
Predicted Functional Partners:
prfA
Bacterial peptide chain release factor 1 (bRF-1); Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.
  
 
 0.928
dusC
tRNA-U20a,U20b-dihydrouridine synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U16 in tRNAs. Belongs to the Dus family. DusC subfamily.
  
    0.654
Pnap_0804
KEGG: pol:Bpro_3117 porin, gram-negative type.
  
     0.549
Pnap_1354
PFAM: porin, Gram-negative type; KEGG: bur:Bcep18194_A4837 outer membrane protein, (porin).
  
     0.512
Pnap_1475
KEGG: pol:Bpro_1726 hypothetical protein.
 
   
 0.478
Pnap_0647
KEGG: pol:Bpro_0746 outer membrane protein (porin)-like.
  
     0.465
Pnap_1300
TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pol:Bpro_3427 RND efflux system, outer membrane lipoprotein, NodT.
       0.460
Pnap_3102
TIGRFAM: phasin family protein; KEGG: rfr:Rfer_3122 phasin.
  
     0.452
Pnap_1612
TIGRFAM: phasin family protein; KEGG: pol:Bpro_3088 phasin.
  
     0.441
plsX
Phosphate:acyl-[acyl carrier protein] acyltransferase; Catalyzes the reversible formation of acyl-phosphate (acyl- PO(4)) from acyl-[acyl-carrier-protein] (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA.
   
    0.433
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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