STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_1315Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: regulatory protein, Crp; KEGG: pol:Bpro_0177 cyclic nucleotide-binding domain (cNMP-BD) protein. (238 aa)    
Predicted Functional Partners:
Pnap_1316
KEGG: pol:Bpro_0178 cyclic nucleotide-binding domain (cNMP-BD) protein.
 
    
0.522
Pnap_0437
Multi-sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; KEGG: mca:MCA1204 sensory box histidine kinase/response regulator.
   
 
 0.481
Pnap_1314
PFAM: Hemerythrin HHE cation binding domain protein; KEGG: eba:ebA1694 hypothetical protein.
       0.457
Pnap_3093
Glycosyltransferase 36; PFAM: putative carbohydrate binding; glycosyltransferase 36; KEGG: pol:Bpro_3667 cyclic beta 1-2 glucan synthetase.
 
 
   0.429
Pnap_1319
PFAM: OmpA domain protein transmembrane region-containing protein; OmpA/MotB domain protein; KEGG: rfr:Rfer_1882 OmpA/MotB; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.
 
   
 0.416
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.