STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_1327TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: tbd:Tbd_2014 hypothetical protein. (168 aa)    
Predicted Functional Partners:
Pnap_1304
PFAM: globin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: pol:Bpro_3408 globin; Belongs to the globin family.
 
   
 0.689
Pnap_1328
Nitric oxide reductase, NorZ apoprotein; KEGG: rfr:Rfer_1886 putative nitric oxide reductase (subunit B) transmembrane protein.
     
 0.632
Pnap_1326
KEGG: nmu:Nmul_A1998 nitrite reductase (NO-forming); TIGRFAM: nitrite reductase, copper-containing; PFAM: blue (type 1) copper domain protein; multicopper oxidase, type 2; multicopper oxidase, type 3; Belongs to the multicopper oxidase family.
     
 0.508
Pnap_1330
PFAM: Invasion gene expression up-regulator, SirB; KEGG: eba:ebB180 predicted invasion gene expression up-regulator, SirB.
 
     0.492
iscS
Cysteine desulfurase IscS; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily.
  
  
 0.487
Pnap_1582
PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: bxe:Bxe_B1453 putative cysteine desulfurase.
  
  
 0.487
iscS-2
Cysteine desulfurase IscS; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins.
  
  
 0.487
Pnap_1329
KEGG: dar:Daro_2384 hypothetical protein.
 
     0.455
Pnap_3970
PFAM: NnrS family protein; KEGG: pol:Bpro_4727 NnrS.
 
  
 0.450
Pnap_3444
TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: rfr:Rfer_3459 transcriptional regulator, BadM/Rrf2 family.
  
   
 0.417
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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