STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_1328Nitric oxide reductase, NorZ apoprotein; KEGG: rfr:Rfer_1886 putative nitric oxide reductase (subunit B) transmembrane protein. (758 aa)    
Predicted Functional Partners:
Pnap_1326
KEGG: nmu:Nmul_A1998 nitrite reductase (NO-forming); TIGRFAM: nitrite reductase, copper-containing; PFAM: blue (type 1) copper domain protein; multicopper oxidase, type 2; multicopper oxidase, type 3; Belongs to the multicopper oxidase family.
 
  
 0.987
Pnap_2637
PFAM: FMN-binding domain protein; KEGG: sil:SPO1521 regulatory protein, putative.
  
  
 0.897
Pnap_3961
KEGG: sil:SPO1521 regulatory protein, putative.
  
  
 0.897
Pnap_1976
PFAM: von Willebrand factor, type A; KEGG: tbd:Tbd_2636 rubisco activation protein CbbO.
  
  
 0.860
Pnap_1329
KEGG: dar:Daro_2384 hypothetical protein.
 
     0.707
Pnap_1977
CbbQ/NirQ/NorQ C-terminal domain protein; PFAM: ATPase associated with various cellular activities, AAA_5; CbbQ/NirQ/NorQ C-terminal domain protein; KEGG: tbd:Tbd_2637 rubisco activation protein CbbQ.
  
  
 0.663
Pnap_0878
Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
  
 
 0.654
Pnap_1327
TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: tbd:Tbd_2014 hypothetical protein.
     
 0.632
Pnap_3970
PFAM: NnrS family protein; KEGG: pol:Bpro_4727 NnrS.
 
  
 0.632
Pnap_3779
Cytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
 
 0.624
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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