STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_1329KEGG: dar:Daro_2384 hypothetical protein. (87 aa)    
Predicted Functional Partners:
Pnap_1330
PFAM: Invasion gene expression up-regulator, SirB; KEGG: eba:ebB180 predicted invasion gene expression up-regulator, SirB.
 
     0.759
Pnap_1328
Nitric oxide reductase, NorZ apoprotein; KEGG: rfr:Rfer_1886 putative nitric oxide reductase (subunit B) transmembrane protein.
 
     0.707
Pnap_3969
KEGG: pol:Bpro_4720 hypothetical protein.
  
     0.642
Pnap_1538
PFAM: 2-nitropropane dioxygenase, NPD; KEGG: rfr:Rfer_1334 2-nitropropane dioxygenase, NPD.
 
     0.627
Pnap_3752
KEGG: pol:Bpro_4585 hypothetical protein.
 
     0.594
Pnap_1327
TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: tbd:Tbd_2014 hypothetical protein.
 
     0.455
Pnap_1326
KEGG: nmu:Nmul_A1998 nitrite reductase (NO-forming); TIGRFAM: nitrite reductase, copper-containing; PFAM: blue (type 1) copper domain protein; multicopper oxidase, type 2; multicopper oxidase, type 3; Belongs to the multicopper oxidase family.
 
     0.448
Pnap_1378
KEGG: rso:RSc0433 probable transmembrane protein.
  
     0.419
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.