STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_1346PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: cold shock domain family protein. (69 aa)    
Predicted Functional Partners:
Pnap_1347
KEGG: retron reverse transcriptase.
     
 0.780
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
   
 
 0.719
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.718
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.685
Pnap_1932
PFAM: RNP-1 like RNA-binding protein; KEGG: pol:Bpro_0624 RNA-binding region RNP-1 (RNA recognition motif).
   
 0.682
Pnap_4105
PFAM: RNP-1 like RNA-binding protein; KEGG: pol:Bpro_4894 RNA-binding region RNP-1 (RNA recognition motif).
   
 0.682
Pnap_0284
KEGG: pol:Bpro_0429 hypothetical protein.
   
 0.677
Pnap_1348
KEGG: retron reverse transcriptase.
     
 0.656
rpsL
SSU ribosomal protein S12P; With S4 and S5 plays an important role in translational accuracy.
   
 
 0.572
Pnap_2197
PFAM: ribosomal protein L31; KEGG: pol:Bpro_2261 ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family.
  
 
 0.567
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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