STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_1354PFAM: porin, Gram-negative type; KEGG: bur:Bcep18194_A4837 outer membrane protein, (porin). (352 aa)    
Predicted Functional Partners:
Pnap_2768
KEGG: pol:Bpro_1834 hypothetical protein.
  
     0.753
Pnap_3102
TIGRFAM: phasin family protein; KEGG: rfr:Rfer_3122 phasin.
  
     0.705
Pnap_1319
PFAM: OmpA domain protein transmembrane region-containing protein; OmpA/MotB domain protein; KEGG: rfr:Rfer_1882 OmpA/MotB; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.
   
 0.690
Pnap_3631
KEGG: pol:Bpro_4435 putative proline rich signal peptide protein.
  
     0.688
Pnap_3470
TIGRFAM: phasin family protein; KEGG: rfr:Rfer_3122 phasin.
  
     0.687
Pnap_0647
KEGG: pol:Bpro_0746 outer membrane protein (porin)-like.
  
  
 
0.675
Pnap_3532
PFAM: porin, Gram-negative type; KEGG: rfr:Rfer_0527 porin, gram-negative type.
  
  
 
0.675
Pnap_2603
PFAM: porin, Gram-negative type; KEGG: rfr:Rfer_0527 porin, gram-negative type.
  
  
 
0.671
Pnap_0650
PFAM: porin, Gram-negative type; KEGG: pol:Bpro_0747 porin, gram-negative type.
  
  
 
0.669
Pnap_0804
KEGG: pol:Bpro_3117 porin, gram-negative type.
  
  
 
0.667
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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