STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_1358PFAM: 20S proteasome, A and B subunits; KEGG: pol:Bpro_3338 20S proteasome, A and B subunits. (275 aa)    
Predicted Functional Partners:
Pnap_1207
PFAM: protein of unknown function DUF403; KEGG: pol:Bpro_3156 protein of unknown function DUF403.
 
    0.830
Pnap_1206
PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: pol:Bpro_3157 protein of unknown function DUF404.
  
 0.811
Pnap_1208
PFAM: transglutaminase domain protein; transglutaminase, N-terminal domain protein; KEGG: pol:Bpro_3155 transglutaminase-like.
 
    0.762
Pnap_1357
KEGG: pol:Bpro_3339 hypothetical protein.
 
     0.720
mutS
DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity.
       0.689
Pnap_1064
PFAM: protein of unknown function DUF403; protein of unknown function DUF404; protein of unknown function DUF407; KEGG: dar:Daro_3009 protein of unknown function DUF403.
 
  
 0.631
Pnap_0034
PFAM: transglutaminase domain protein; KEGG: pol:Bpro_0068 transglutaminase-like.
 
    0.533
Pnap_1060
PFAM: transglutaminase domain protein; KEGG: pol:Bpro_0068 transglutaminase-like.
 
    0.520
Pnap_3986
PFAM: transglutaminase domain protein; KEGG: hch:HCH_03352 transglutaminase-like enzyme, putative cysteine protease.
 
    0.514
Pnap_1061
PFAM: transglutaminase domain protein; transglutaminase, N-terminal domain protein; KEGG: rpc:RPC_0967 transglutaminase-like.
 
    0.478
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.