STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_1373PFAM: polysaccharide deacetylase; KEGG: pol:Bpro_3302 polysaccharide deacetylase. (267 aa)    
Predicted Functional Partners:
Pnap_1374
KEGG: pol:Bpro_3301 hypothetical protein.
 
     0.949
Pnap_1375
Putative transmembrane protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
 
     0.949
Pnap_1376
PFAM: lipid A biosynthesis acyltransferase; KEGG: pol:Bpro_3299 putative lauroyl/myristoyl acyltransferase involved in LPS biosynthesis.
 
     0.946
Pnap_1370
KEGG: pol:Bpro_3305 hypothetical protein.
 
     0.894
Pnap_1369
KEGG: pol:Bpro_3306 hypothetical protein.
 
     0.879
Pnap_1379
KEGG: pol:Bpro_3295 acyl carrier protein.
 
   
 0.817
Pnap_1371
PFAM: beta-ketoacyl synthase; KEGG: tbd:Tbd_2753 3-oxoacyl-(acyl carrier protein) synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
     0.793
Pnap_1372
PFAM: phosphoesterase, PA-phosphatase related; KEGG: pol:Bpro_3303 phosphoesterase, PA-phosphatase related.
       0.784
Pnap_1378
KEGG: rso:RSc0433 probable transmembrane protein.
 
     0.782
Pnap_1367
PFAM: glycosyl transferase, family 2; KEGG: pol:Bpro_3309 glycosyl transferase, family 2.
 
  
 0.770
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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