STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_1445PFAM: secretion protein HlyD family protein; KEGG: pol:Bpro_3235 secretion protein HlyD. (444 aa)    
Predicted Functional Partners:
Pnap_1446
TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_3234 drug resistance transporter EmrB/QacA subfamily.
 
 0.969
Pnap_1444
TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pol:Bpro_3236 RND efflux system, outer membrane lipoprotein, NodT.
 
 0.950
Pnap_2594
TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pol:Bpro_2829 RND efflux system, outer membrane lipoprotein, NodT.
 
 0.756
Pnap_1300
TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pol:Bpro_3427 RND efflux system, outer membrane lipoprotein, NodT.
 
 0.755
Pnap_2885
TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pol:Bpro_2037 RND efflux system, outer membrane lipoprotein, NodT.
 
 0.748
Pnap_0566
TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: rso:RS02156 putative outer membrane drug efflux lipoprotein.
 
 0.743
Pnap_1660
PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_0977 major facilitator superfamily MFS_1.
 
 0.736
Pnap_2969
TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: rso:RS05806 putative outer membrane lipoprotein.
 
 0.693
Pnap_3900
TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: rfr:Rfer_4106 RND efflux system, outer membrane lipoprotein, NodT.
 
 
 0.686
Pnap_3547
TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: rfr:Rfer_3184 RND efflux system, outer membrane lipoprotein, NodT.
 
 0.679
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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