STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_1475KEGG: pol:Bpro_1726 hypothetical protein. (263 aa)    
Predicted Functional Partners:
Pnap_1170
N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; KEGG: pol:Bpro_3199 N-acetylmuramoyl-L-alanine amidase.
  
   0.780
Pnap_3712
KEGG: pol:Bpro_4483 protein of unknown function DUF132.
  
     0.752
Pnap_0783
KEGG: pol:Bpro_0862 hypothetical protein.
  
     0.750
Pnap_4106
PFAM: protein of unknown function DUF1239; KEGG: pol:Bpro_4896 protein of unknown function DUF1239.
  
     0.744
Pnap_1612
TIGRFAM: phasin family protein; KEGG: pol:Bpro_3088 phasin.
  
     0.743
Pnap_2782
KEGG: pol:Bpro_1805 putative transmembrane protein.
  
     0.738
Pnap_1713
PFAM: RDD domain containing protein; KEGG: pol:Bpro_2313 hypothetical protein.
 
     0.736
Pnap_2198
KEGG: pol:Bpro_2260 hypothetical protein.
  
     0.723
tatB
Twin-arginine translocation protein, TatB subunit; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation.
  
 
 0.722
Pnap_3102
TIGRFAM: phasin family protein; KEGG: rfr:Rfer_3122 phasin.
  
     0.717
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.