STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_1483KEGG: cvi:CV2106 probable transcriptional regulator; Belongs to the GbsR family. (174 aa)    
Predicted Functional Partners:
Pnap_1479
KEGG: bur:Bcep18194_B0200 integral membrane protein-like.
 
     0.684
Pnap_1481
PFAM: NAD-dependent epimerase/dehydratase; Male sterility C-terminal domain; KEGG: bur:Bcep18194_B0199 NAD-dependent epimerase/dehydratase.
 
     0.623
Pnap_1482
PFAM: putative thiol-disulphide oxidoreductase DCC; KEGG: bur:Bcep18194_B0201 putative thiol-disulphide oxidoreductase DCC.
       0.605
Pnap_1480
KEGG: mfa:Mfla_1438 NAD-dependent epimerase/dehydratase.
       0.551
Pnap_1484
PFAM: zinc/iron permease; KEGG: pol:Bpro_1734 zinc/iron permease.
       0.406
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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