STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_1484PFAM: zinc/iron permease; KEGG: pol:Bpro_1734 zinc/iron permease. (271 aa)    
Predicted Functional Partners:
Pnap_2839
TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: rfr:Rfer_3644 cation diffusion facilitator family transporter.
 
 
 0.566
Pnap_4090
Heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: pol:Bpro_4872 heavy metal translocating P-type ATPase.
 
   
 0.497
Pnap_1927
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
  
 0.495
Pnap_0130
PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_0192 major facilitator superfamily MFS_1.
 
   
 0.463
Pnap_0892
PFAM: peptidase M16 domain protein; KEGG: pol:Bpro_1279 peptidase M16-like.
  
    0.436
Pnap_0883
KEGG: pol:Bpro_1250 putative transmembrane protein.
  
     0.425
Pnap_0893
PFAM: peptidase M16 domain protein; KEGG: pol:Bpro_1280 peptidase M16-like.
  
    0.425
Pnap_1497
KEGG: pol:Bpro_1743 putative transmembrane protein.
  
   0.417
Pnap_3240
KEGG: pol:Bpro_3883 hypothetical protein.
 
   
 0.417
Pnap_3897
KEGG: pol:Bpro_4655 hypothetical protein.
  
     0.411
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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