STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_1490KEGG: bcn:Bcen_5721 hypothetical protein. (400 aa)    
Predicted Functional Partners:
Pnap_1491
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMa0081 putative ABC transporter permease; TC 3.A.1.3.-.
       0.603
Pnap_1492
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMa0079 putative ABC transporter permease; TC 3.A.1.3.-.
       0.603
Pnap_1489
PFAM: extracellular solute-binding protein, family 3; KEGG: sme:SMa0082 putative ABC transporter, periplasmic solute-binding protein; TC 3.A.1.3.-.
       0.598
Pnap_1485
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: pol:Bpro_1736 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding.
  
    0.536
Pnap_1487
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: epimerase KguE, putative.
       0.536
Pnap_1486
PFAM: PfkB domain protein; KEGG: pol:Bpro_1737 PfkB.
     
 0.527
Pnap_1488
Amino acid ABC transporter ATP-binding protein, PAAT family; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMa0083 putative ABC transporter ATP-binding protein; TC 3.A.1.3.-.
       0.524
Pnap_1493
Transcriptional regulator, LacI family; PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: pol:Bpro_1738 transcriptional regulator, LacI family.
   
   0.479
Pnap_2785
TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: pol:Bpro_1802 hypothetical protein.
  
     0.447
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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