STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_1492TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMa0079 putative ABC transporter permease; TC 3.A.1.3.-. (223 aa)    
Predicted Functional Partners:
Pnap_1488
Amino acid ABC transporter ATP-binding protein, PAAT family; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMa0083 putative ABC transporter ATP-binding protein; TC 3.A.1.3.-.
 0.993
Pnap_1028
Amino acid ABC transporter substrate-binding protein, PAAT family; PFAM: extracellular solute-binding protein, family 3; SMART: ionotropic glutamate receptor; KEGG: pol:Bpro_1440 extracellular solute-binding protein, family 3; TC 3.A.1.3.-.
 
 0.981
Pnap_1491
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMa0081 putative ABC transporter permease; TC 3.A.1.3.-.
 
  
 
0.981
Pnap_3442
Amino acid ABC transporter substrate-binding protein, PAAT family; PFAM: extracellular solute-binding protein, family 3; SMART: ionotropic glutamate receptor; KEGG: pol:Bpro_1050 extracellular solute-binding protein, family 3; TC 3.A.1.3.-.
 
 0.980
Pnap_1489
PFAM: extracellular solute-binding protein, family 3; KEGG: sme:SMa0082 putative ABC transporter, periplasmic solute-binding protein; TC 3.A.1.3.-.
 
 0.935
Pnap_2057
Amino acid ABC transporter ATP-binding protein, PAAT family; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_2727 ABC transporter related; TC 3.A.1.3.-.
 
 0.901
Pnap_4062
Amino acid ABC transporter ATP-binding protein, PAAT family; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_1504 ABC transporter related; TC 3.A.1.3.-.
 
 0.898
Pnap_2072
Amino acid ABC transporter ATP-binding protein, PAAT family; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_3973 ABC transporter related; TC 3.A.1.3.-.
 
 0.893
Pnap_3455
L-aspartate ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_3901 ABC transporter related.
 
 0.883
Pnap_4065
Amino acid ABC transporter substrate-binding protein, PAAT family; PFAM: extracellular solute-binding protein, family 3; KEGG: rfr:Rfer_0161 extracellular solute-binding protein, family 3; TC 3.A.1.3.-.
 
 0.852
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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