STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_1497KEGG: pol:Bpro_1743 putative transmembrane protein. (300 aa)    
Predicted Functional Partners:
Pnap_1496
PFAM: Rhodanese domain protein; KEGG: pol:Bpro_1742 3-mercaptopyruvate sulfurtransferase.
       0.800
Pnap_1498
PFAM: Rieske [2Fe-2S] domain protein; KEGG: pol:Bpro_1744 Rieske (2Fe-2S) region.
 
     0.629
Pnap_3275
PFAM: protein of unknown function DUF6, transmembrane; KEGG: pol:Bpro_1004 putative transmembrane protein.
  
     0.608
Pnap_1495
Hypothetical protein.
       0.600
Pnap_3897
KEGG: pol:Bpro_4655 hypothetical protein.
  
     0.457
Pnap_3087
PFAM: HemY domain protein; KEGG: pol:Bpro_3661 putative porphyrin biosynthesis related protein.
 
     0.439
Pnap_1494
KEGG: pol:Bpro_1739 hypothetical protein.
 
     0.430
Pnap_1484
PFAM: zinc/iron permease; KEGG: pol:Bpro_1734 zinc/iron permease.
  
   0.417
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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