STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_1498PFAM: Rieske [2Fe-2S] domain protein; KEGG: pol:Bpro_1744 Rieske (2Fe-2S) region. (372 aa)    
Predicted Functional Partners:
Pnap_0180
PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: pol:Bpro_0229 glucose-methanol-choline oxidoreductase.
    
 0.912
Pnap_0350
Phospholipase A1; Hydrolysis of phosphatidylcholine with phospholipase A2 (EC 3.1.1.4) and phospholipase A1 (EC 3.1.1.32) activities. Belongs to the phospholipase A1 family.
     
  0.800
Pnap_3985
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rba:RB12285 conserved hypothetical protein-putative dimethyladenosine transferase (rRNA methylation).
     
  0.800
psd
Phosphatidylserine decarboxylase; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).
     
  0.800
Pnap_3470
TIGRFAM: phasin family protein; KEGG: rfr:Rfer_3122 phasin.
  
     0.717
Pnap_2802
KEGG: pol:Bpro_1783 hypothetical protein.
  
     0.695
Pnap_3631
KEGG: pol:Bpro_4435 putative proline rich signal peptide protein.
  
     0.695
xseB
Exodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
 
     0.693
Pnap_3405
PFAM: ribonuclease II; KEGG: pol:Bpro_1089 ribonuclease II.
  
     0.682
Pnap_3102
TIGRFAM: phasin family protein; KEGG: rfr:Rfer_3122 phasin.
  
     0.671
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.