STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_1510Amino acid ABC transporter ATP-binding protein, PAAT family; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_1759 ABC transporter related; TC 3.A.1.3.-; Belongs to the ABC transporter superfamily. (229 aa)    
Predicted Functional Partners:
Pnap_1509
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_1758 binding-protein-dependent transport systems inner membrane component.
  
  0.988
Pnap_1511
KEGG: pol:Bpro_1760 hypothetical protein.
 
 
  0.967
Pnap_3534
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eca:ECA4073 ABC transporter ATP binding protein.
 
    
0.905
Pnap_3832
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc01528 putative dipeptide transport ATP-binding ABC transporter protein.
 
    
0.904
Pnap_3550
PFAM: protein of unknown function DUF214; KEGG: rfr:Rfer_3187 protein of unknown function DUF214.
 
      0.899
Pnap_1544
Sulfate ABC transporter, inner membrane subunit CysT; Part of the ABC transporter complex (TC 3.A.1.6.1) involved in sulfate/thiosulfate import; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
 
 
  
 0.830
Pnap_3456
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_3902 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; TC 3.A.1.3.-.
 
 0.710
rpsE
SSU ribosomal protein S5P; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.
  
     0.686
Pnap_1508
PFAM: regulatory protein, LysR; KEGG: pol:Bpro_1757 transcriptional regulator of molybdate metabolism, LysR family.
 
     0.642
Pnap_2056
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_2726 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; TC 3.A.1.3.-.
 
 0.634
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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