STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_1511KEGG: pol:Bpro_1760 hypothetical protein. (275 aa)    
Predicted Functional Partners:
Pnap_1509
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_1758 binding-protein-dependent transport systems inner membrane component.
 
  
 0.992
Pnap_1510
Amino acid ABC transporter ATP-binding protein, PAAT family; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_1759 ABC transporter related; TC 3.A.1.3.-; Belongs to the ABC transporter superfamily.
 
 
  0.967
Pnap_1508
PFAM: regulatory protein, LysR; KEGG: pol:Bpro_1757 transcriptional regulator of molybdate metabolism, LysR family.
 
   
 0.914
fdhD
Formate dehydrogenase, subunit FdhD; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.
 
     0.792
Pnap_0049
PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase-like; KEGG: rfr:Rfer_2850 aldehyde ferredoxin oxidoreductase.
 
   
 0.786
Pnap_0834
PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: pol:Bpro_0937 twin-arginine translocation pathway signal; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
     0.770
Pnap_0833
PFAM: cytoplasmic chaperone TorD family protein; KEGG: pol:Bpro_0935 cytoplasmic chaperone TorD.
 
     0.767
Pnap_0835
Formate dehydrogenase beta subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: pol:Bpro_0938 4Fe-4S ferredoxin, iron-sulfur binding.
 
   
 0.756
Pnap_0837
TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: pol:Bpro_0940 formate dehydrogenase, gamma subunit.
 
   
 0.755
Pnap_0832
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: rfr:Rfer_3264 4Fe-4S ferredoxin, iron-sulfur binding.
 
     0.752
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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