STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_1528KEGG: pol:Bpro_3120 putative transcriptional regulator. (107 aa)    
Predicted Functional Partners:
Pnap_3447
KEGG: pol:Bpro_1033 hypothetical protein.
  
     0.741
Pnap_0923
PFAM: response regulator receiver; KEGG: pol:Bpro_0882 response regulator receiver domain protein (CheY-like).
  
    0.713
Pnap_2903
KEGG: pol:Bpro_2871 hypothetical protein.
  
     0.708
Pnap_3994
PFAM: response regulator receiver; KEGG: pol:Bpro_0607 response regulator receiver domain protein (CheY-like).
  
    0.682
Pnap_3957
PFAM: regulatory protein, MarR; KEGG: pol:Bpro_4686 transcriptional regulator, MarR family.
  
  
 0.679
Pnap_0398
PFAM: response regulator receiver; KEGG: pol:Bpro_0882 response regulator receiver domain protein (CheY-like).
  
    0.639
Pnap_3087
PFAM: HemY domain protein; KEGG: pol:Bpro_3661 putative porphyrin biosynthesis related protein.
  
     0.551
Pnap_0856
PFAM: protein of unknown function DUF490; KEGG: pol:Bpro_1217 protein of unknown function DUF490.
  
     0.514
Pnap_0783
KEGG: pol:Bpro_0862 hypothetical protein.
  
     0.493
Pnap_1530
PFAM: protein of unknown function DUF1696; KEGG: oih:OB3216 hypothetical protein.
     
 0.471
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.