STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_1533KEGG: rfr:Rfer_0745 diheme cytochrome c. (160 aa)    
Predicted Functional Partners:
Pnap_1532
KEGG: rsp:RSP_2021 mono-heme class I cytochrome c.
 
    0.923
Pnap_1534
PFAM: cytochrome B561; KEGG: bte:BTH_II0067 CybP.
     0.899
Pnap_1536
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rfr:Rfer_0504 periplasmic sensor signal transduction histidine kinase.
       0.704
Pnap_1535
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rfr:Rfer_0503 two component transcriptional regulator, winged helix family.
       0.692
Pnap_0590
PFAM: cytochrome B561; KEGG: dar:Daro_3282 cytochrome b561, bacterial.
     0.560
Pnap_0215
PFAM: cytochrome B561; KEGG: pol:Bpro_0268 cytochrome b561.
     0.546
cbbM
Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type II subfamily.
  
     0.437
Pnap_2193
DNA helicase/exodeoxyribonuclease V, subunit A; PFAM: UvrD/REP helicase; KEGG: pol:Bpro_2265 UvrD/REP helicase.
  
     0.426
Pnap_1537
PFAM: protein of unknown function DUF125, transmembrane; KEGG: eba:ebA544 hypothetical protein.
       0.421
Pnap_0913
PFAM: BLUF domain protein; KEGG: pol:Bpro_0870 sensors of blue-light using FAD.
   
 
 0.411
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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