STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_1534PFAM: cytochrome B561; KEGG: bte:BTH_II0067 CybP. (254 aa)    
Predicted Functional Partners:
Pnap_1533
KEGG: rfr:Rfer_0745 diheme cytochrome c.
     0.899
Pnap_1532
KEGG: rsp:RSP_2021 mono-heme class I cytochrome c.
 
  
 0.844
Pnap_1536
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rfr:Rfer_0504 periplasmic sensor signal transduction histidine kinase.
 
     0.782
Pnap_1535
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rfr:Rfer_0503 two component transcriptional regulator, winged helix family.
       0.750
Pnap_3659
KEGG: psp:PSPPH_3452 hypothetical protein.
 
     0.687
Pnap_2389
PFAM: peptidase M14, carboxypeptidase A; KEGG: pol:Bpro_2152 peptidase M14, carboxypeptidase A.
  
     0.508
Pnap_1325
KEGG: rfr:Rfer_1390 phosphoesterase, DHHA1.
  
     0.492
Pnap_2208
Amino acid/amide ABC transporter substrate-binding protein, HAAT family; KEGG: pol:Bpro_2250 twin-arginine translocation pathway signal; TC 3.A.1.4.-.
  
     0.479
Pnap_1537
PFAM: protein of unknown function DUF125, transmembrane; KEGG: eba:ebA544 hypothetical protein.
       0.466
modC
Molybdate ABC transporter, ATPase subunit; Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Molybdate importer (TC 3.A.1.8) family.
  
     0.431
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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