STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_1581KEGG: bxe:Bxe_B1452 hypothetical protein. (117 aa)    
Predicted Functional Partners:
Pnap_1577
KEGG: bxe:Bxe_B1448 hypothetical protein.
       0.798
Pnap_1578
PFAM: leucine rich repeat variant; KEGG: bxe:Bxe_B1449 hypothetical protein.
       0.798
Pnap_1579
PFAM: NifZ family protein; KEGG: bxe:Bxe_B1450 hypothetical protein.
       0.798
Pnap_1580
PFAM: NifZ family protein; KEGG: bxe:Bxe_B1451 hypothetical protein.
       0.798
Pnap_1582
PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: bxe:Bxe_B1453 putative cysteine desulfurase.
       0.700
Pnap_1576
TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: bxe:Bxe_B1447 HesB/YadR/YfhF; Belongs to the HesB/IscA family.
       0.698
Pnap_1575
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: rpa:RPA4629 ferredoxin 2[4Fe-4S], FdxN.
       0.631
Pnap_1583
PFAM: NifT/FixU family protein; KEGG: bxe:Bxe_B1454 nitrogen fixation protein.
       0.617
Pnap_1586
KEGG: bxe:Bxe_B1457 hypothetical protein.
       0.594
Pnap_1584
KEGG: bxe:Bxe_B1455 hypothetical protein.
       0.585
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.