STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_1586KEGG: bxe:Bxe_B1457 hypothetical protein. (281 aa)    
Predicted Functional Partners:
Pnap_1583
PFAM: NifT/FixU family protein; KEGG: bxe:Bxe_B1454 nitrogen fixation protein.
 
    0.965
Pnap_1578
PFAM: leucine rich repeat variant; KEGG: bxe:Bxe_B1449 hypothetical protein.
 
    0.912
Pnap_1579
PFAM: NifZ family protein; KEGG: bxe:Bxe_B1450 hypothetical protein.
 
    0.911
Pnap_1580
PFAM: NifZ family protein; KEGG: bxe:Bxe_B1451 hypothetical protein.
 
    0.907
Pnap_1577
KEGG: bxe:Bxe_B1448 hypothetical protein.
 
     0.902
Pnap_1585
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: bxe:Bxe_B1456 putative DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
     0.889
Pnap_1574
TIGRFAM: nitrogenase cofactor biosynthesis protein NifB; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis; Radical SAM domain protein; KEGG: bxe:Bxe_B1446 nitrogenase cofactor biosynthesis protein NifB.
 
    0.840
Pnap_2322
PFAM: protein of unknown function DUF269; KEGG: bxe:Bxe_B1473 hypothetical protein.
 
  
 0.825
nifW
Nitrogen fixation protein NifW; May protect the nitrogenase Fe-Mo protein from oxidative damage; Belongs to the NifW family.
 
    0.818
Pnap_2319
PFAM: NifQ family protein; KEGG: bxe:Bxe_B1476 putative nitrogen fixation-related protein(NifQ).
 
    0.790
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.