STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_1601PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_3101 uncharacterized protein UPF0065. (322 aa)    
Predicted Functional Partners:
Pnap_3237
PFAM: protein of unknown function DUF112, transmembrane; KEGG: pol:Bpro_3880 protein of unknown function DUF112, transmembrane.
 
  
 0.838
Pnap_1236
PFAM: protein of unknown function DUF112, transmembrane; KEGG: pol:Bpro_2011 protein of unknown function DUF112, transmembrane.
 
  
 0.832
Pnap_3238
PFAM: protein of unknown function DUF1468; KEGG: pol:Bpro_3881 protein of unknown function DUF1468.
 
  
 0.679
Pnap_1600
KEGG: pol:Bpro_3102 2-hydroxy-3-oxopropionate reductase; TIGRFAM: 2-hydroxy-3-oxopropionate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding.
       0.648
Pnap_1599
PFAM: HpcH/HpaI aldolase; KEGG: pol:Bpro_3103 2-dehydro-3-deoxyglucarate aldolase; Belongs to the HpcH/HpaI aldolase family.
       0.544
Pnap_1602
PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: csa:Csal_2479 TRAP dicarboxylate transporter, DctP subunit.
       0.516
Pnap_1598
PFAM: aldehyde dehydrogenase; KEGG: rfr:Rfer_0452 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
       0.409
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.