Pnap_1608 protein (Polaromonas naphthalenivorans)

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second shell of interactors

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Edges:

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Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

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Experiments

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[Homology]

Score

Pnap_1608

Hypothetical protein. (153 aa)

Predicted Functional Partners:

Pnap_1609

0.460

Pnap_1607

0.456

Your Current Organism:

Polaromonas naphthalenivorans

NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Pnap_1607	Pnap_1608	Gamma-glutamyltransferase 1, Threonine peptidase, MEROPS family T03; KEGG: pol:Bpro_3094 gamma-glutamyltransferase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase.	Hypothetical protein.	0.456
Pnap_1608	Pnap_1607	Hypothetical protein.	Gamma-glutamyltransferase 1, Threonine peptidase, MEROPS family T03; KEGG: pol:Bpro_3094 gamma-glutamyltransferase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase.	0.456
Pnap_1608	Pnap_1609	Hypothetical protein.	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rfr:Rfer_2204 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.460
Pnap_1609	Pnap_1608	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rfr:Rfer_2204 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Hypothetical protein.	0.460

Network Stats

number of nodes:

11

number of edges:

55

average node degree:

10

avg. local clustering coefficient:

1

expected number of edges:

29

PPI enrichment p-value:

3.91e-06

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
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Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006351

Transcription, DNA-templated

4 of 10

1.72

1.59

0.00034

GO:0016070

RNA metabolic process

7 of 91

1.01

0.91

0.00034

GO:0010467

Gene expression

9 of 147

0.91

0.87

5.22e-05

GO:0006353

DNA-templated transcription, termination

2 of 4

1.82

0.8

0.0287

GO:0034654

Nucleobase-containing compound biosynthetic process

5 of 88

0.88

0.58

0.0133

(more ...)

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0016779

Nucleotidyltransferase activity

4 of 28

1.28

0.88

0.0066

GO:0003723

RNA binding

6 of 83

0.98

0.75

0.0030

GO:0003676

Nucleic acid binding

9 of 230

0.71

0.57

0.0011

GO:1901363

Heterocyclic compound binding

10 of 446

0.47

0.36

0.0066

GO:0097159

Organic cyclic compound binding

10 of 446

0.47

0.36

0.0066

(more ...)

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:285

Ribosomal small subunit biogenesis, and tRNA pseudouridine synthesis

3 of 5

1.9

1.47

0.0011

CL:110

Ribosome, and Protein transport

7 of 96

0.98

0.9

0.00027

CL:104

Gene expression, and Protein folding

9 of 192

0.79

0.7

0.00019

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map03018

RNA degradation

4 of 14

1.58

1.44

0.00047

map03020

RNA polymerase

2 of 4

1.82

0.76

0.0353

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0806

Transcription termination

2 of 3

1.94

0.83

0.0264

KW-0240

DNA-directed RNA polymerase

2 of 4

1.82

0.82

0.0264

KW-0548

Nucleotidyltransferase

3 of 20

1.3

0.7

0.0264

KW-0694

RNA-binding

5 of 63

1.02

0.68

0.0109

KW-0804

Transcription

4 of 45

1.07

0.62

0.0241

Protein Domains (SMART)

domain

description

count in network

strength

signal

false discovery rate

SM00322

K homology RNA-binding domain

2 of 4

1.82

0.73

0.0402

SM00316

Ribosomal protein S1-like RNA-binding domain

2 of 4

1.82

0.73

0.0402

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