STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_1613PFAM: histone deacetylase superfamily; KEGG: pol:Bpro_3087 histone deacetylase superfamily. (333 aa)    
Predicted Functional Partners:
Pnap_1615
PFAM: nitroreductase; KEGG: pol:Bpro_3085 nitroreductase.
  
    0.780
Pnap_1614
PFAM: thioesterase superfamily protein; KEGG: pol:Bpro_3086 thioesterase superfamily.
       0.778
Pnap_1616
Branched-chain amino acid transport system permease protein; PFAM: inner-membrane translocator; KEGG: pol:Bpro_3084 inner-membrane translocator; TC 3.A.1.4.-; TC 3.A.1.4.-; Belongs to the binding-protein-dependent transport system permease family.
       0.773
Pnap_1617
Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_3083 ABC transporter related; TC 3.A.1.4.-.
       0.773
Pnap_1618
Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_3082 ABC transporter related; TC 3.A.1.4.-.
       0.773
htpG
Heat shock protein Hsp90; Molecular chaperone. Has ATPase activity.
    
 0.704
Pnap_1619
PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: pol:Bpro_3081 peptidylprolyl isomerase.
   
 
 0.626
Pnap_1588
PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: mca:MCA2837 amine oxidase family, flavin-containing protein.
    
 0.598
Pnap_1096
PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases-like; KEGG: nha:Nham_2839 SNF2-related.
    
 0.553
Pnap_3964
PFAM: nuclear protein SET; KEGG: pol:Bpro_4715 nuclear protein SET.
  
 0.550
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.