STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_1621Transporter, UIT6 family; KEGG: pol:Bpro_3079 putative transmembrane protein; TC 9.B.53. (477 aa)    
Predicted Functional Partners:
pncB
Nicotinate phosphoribosyltransferase; Catalyzes the synthesis of beta-nicotinate D-ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP; Belongs to the NAPRTase family.
       0.799
Pnap_1622
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: pol:Bpro_3078 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding.
       0.751
Pnap_1623
PFAM: protein of unknown function DUF195; KEGG: pol:Bpro_3077 protein of unknown function DUF195.
       0.668
Pnap_1619
PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: pol:Bpro_3081 peptidylprolyl isomerase.
       0.528
Pnap_1614
PFAM: thioesterase superfamily protein; KEGG: pol:Bpro_3086 thioesterase superfamily.
       0.496
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
  
    0.475
Pnap_1615
PFAM: nitroreductase; KEGG: pol:Bpro_3085 nitroreductase.
     
 0.442
Pnap_3942
PFAM: O-antigen polymerase; KEGG: pol:Bpro_4672 O-antigen polymerase.
  
    0.436
Pnap_2431
KEGG: pol:Bpro_2335 sulfate adenylyltransferase, large subunit; TIGRFAM: sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor, GTP-binding.
     
 0.420
Pnap_1613
PFAM: histone deacetylase superfamily; KEGG: pol:Bpro_3087 histone deacetylase superfamily.
       0.414
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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