STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_1644KEGG: pfl:PFL_2976 hypothetical protein. (334 aa)    
Predicted Functional Partners:
Pnap_1643
PFAM: glycosyl transferase, group 1; KEGG: nmu:Nmul_A2434 glycosyl transferase, group 1.
   
 
 0.850
htpG
Heat shock protein Hsp90; Molecular chaperone. Has ATPase activity.
  
 0.845
Pnap_1642
KEGG: nmu:Nmul_A2433 hypothetical protein.
     
 0.841
Pnap_1645
KEGG: pau:PA14_24510 hypothetical protein.
  
  
 0.837
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.784
Pnap_1641
Hypothetical protein.
       0.752
Pnap_1640
KEGG: rxy:Rxyl_2670 hypothetical protein.
   
 
 0.601
Pnap_2676
PFAM: chalcone and stilbene synthases domain protein; Chalcone and stilbene synthases domain protein; FAE1/Type III polyketide synthase-like protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; KEGG: sru:SRU_1395 chalcone synthase, putative.
    
 0.600
Pnap_1646
KEGG: nmu:Nmul_A2441 hypothetical protein.
     
 0.594
Pnap_2297
PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: pol:Bpro_1210 beta-lactamase-like.
   
 0.591
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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