STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_1753KEGG: ccr:CC2592 ISCc1, transposase OrfB. (115 aa)    
Predicted Functional Partners:
Pnap_1754
Transposase and inactivated derivatives-like protein; KEGG: lpl:lp_3570 transposase (putative).
     0.961
Pnap_1755
PFAM: Peptidoglycan-binding LysM; KEGG: rme:Rmet_0917 peptidoglycan-binding LysM.
       0.584
Pnap_1756
D-amino-acid dehydrogenase; PFAM: FAD dependent oxidoreductase; KEGG: pol:Bpro_2697 D-amino-acid dehydrogenase.
       0.474
Pnap_4096
PFAM: transposase, IS4 family protein; KEGG: neu:NE2504 transposase IS4 family.
  
     0.416
Pnap_1752
KEGG: sgl:SG2354 hypothetical protein.
       0.406
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.