STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_1755PFAM: Peptidoglycan-binding LysM; KEGG: rme:Rmet_0917 peptidoglycan-binding LysM. (195 aa)    
Predicted Functional Partners:
Pnap_3301
PFAM: GPW/gp25 family protein; KEGG: syf:Synpcc7942_0739 hypothetical protein.
  
   0.840
Pnap_3315
PFAM: phage late control D family protein; KEGG: xcc:XCC2994 phage-related tail protein.
  
   0.782
Pnap_0676
TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB, short N-terminal domain; KEGG: pol:Bpro_0785 type II and III secretion system protein.
   
 
 0.779
Pnap_2249
KEGG: xfa:XF0518 hypothetical protein.
  
 
 0.771
Pnap_3308
PFAM: phage tail sheath protein; KEGG: yps:YPTB1841 putative bacteriophage P2 tail sheath protein.
  
 
 0.771
Pnap_1756
D-amino-acid dehydrogenase; PFAM: FAD dependent oxidoreductase; KEGG: pol:Bpro_2697 D-amino-acid dehydrogenase.
 
     0.687
Pnap_1753
KEGG: ccr:CC2592 ISCc1, transposase OrfB.
       0.584
Pnap_1754
Transposase and inactivated derivatives-like protein; KEGG: lpl:lp_3570 transposase (putative).
       0.584
Pnap_3700
PFAM: PsiF repeat protein; KEGG: reu:Reut_A0351 PsiF.
  
    0.574
Pnap_0853
KEGG: pol:Bpro_1153 hypothetical protein.
  
  
 0.566
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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