STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_1799KEGG: pol:Bpro_3875 hypothetical protein. (198 aa)    
Predicted Functional Partners:
Pnap_1800
PFAM: isochorismatase hydrolase; KEGG: pol:Bpro_2647 isochorismatase hydrolase.
       0.553
Pnap_2836
PFAM: protein of unknown function DUF214; KEGG: rfr:Rfer_3624 protein of unknown function DUF214.
  
     0.465
Pnap_2838
Hypothetical protein; KEGG: rfr:Rfer_3622 transcriptional regulator, TetR family.
  
     0.448
Pnap_0569
PFAM: cytochrome c, class II; KEGG: mag:amb0751 cytochrome c' precursor.
  
     0.443
Pnap_2842
KEGG: eba:ebA6677 hypothetical protein.
  
     0.433
Pnap_1798
KEGG: pol:Bpro_2648 hypothetical protein.
       0.431
Pnap_2837
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rfr:Rfer_3623 secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
     0.404
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.