STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_1828KEGG: bxe:Bxe_B0552 hypothetical protein. (538 aa)    
Predicted Functional Partners:
Pnap_1827
PFAM: OmpW family protein; KEGG: pha:PSHAa2155 protein W (OmpW).
 
     0.837
Pnap_0404
TIGRFAM: conserved repeat domain; KEGG: pcr:Pcryo_1048 hypothetical protein.
  
     0.684
Pnap_0405
TIGRFAM: conserved repeat domain; KEGG: sme:SMc01711 hypothetical protein.
 
     0.668
Pnap_1896
PFAM: CHRD domain containing protein; KEGG: pol:Bpro_3001 chordin.
  
     0.650
Pnap_2911
Tfp pilus assembly protein PilW-like protein; KEGG: bps:BPSL2754 putative membrane protein.
  
     0.633
Pnap_1826
PFAM: Aldose 1-epimerase; KEGG: xom:XOO_0261 transglycolase; Belongs to the glucose-6-phosphate 1-epimerase family.
       0.610
Pnap_0632
KEGG: dar:Daro_3554 hypothetical protein.
  
     0.595
Pnap_0185
KEGG: pol:Bpro_0233 putative lipoprotein.
  
     0.588
Pnap_3497
KEGG: pol:Bpro_4026 hypothetical protein.
 
     0.583
Pnap_3812
PFAM: porin, Gram-negative type; KEGG: pol:Bpro_4558 porin, gram-negative type.
  
    0.574
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.