STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_1829PFAM: protein of unknown function DUF1624; KEGG: rfr:Rfer_2413 protein of unknown function DUF1624. (244 aa)    
Predicted Functional Partners:
Pnap_3163
KEGG: psp:PSPPH_3940 hypothetical protein.
 
     0.610
Pnap_1828
KEGG: bxe:Bxe_B0552 hypothetical protein.
       0.525
Pnap_1827
PFAM: OmpW family protein; KEGG: pha:PSHAa2155 protein W (OmpW).
       0.494
Pnap_1830
Catalase; PFAM: ThiJ/PfpI domain protein; Catalase domain protein; KEGG: nmu:Nmul_A1515 catalase.
       0.489
Pnap_3161
KEGG: xac:XAC2710 hypothetical protein.
  
     0.462
Pnap_1826
PFAM: Aldose 1-epimerase; KEGG: xom:XOO_0261 transglycolase; Belongs to the glucose-6-phosphate 1-epimerase family.
       0.425
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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