STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_1837PFAM: AMP-dependent synthetase and ligase; KEGG: pol:Bpro_2579 AMP-dependent synthetase and ligase. (541 aa)    
Predicted Functional Partners:
Pnap_1225
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pol:Bpro_3141 acyl-CoA dehydrogenase-like.
 
 
 0.922
Pnap_3285
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rfr:Rfer_2268 acyl-CoA dehydrogenase-like.
 
 
 0.921
Pnap_0309
PFAM: phospholipid/glycerol acyltransferase; major facilitator superfamily MFS_1; KEGG: pol:Bpro_0457 phospholipid/glycerol acyltransferase.
  
 
 0.884
Pnap_0825
NAD-dependent formate dehydrogenase flavoprotein subunit; PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: rfr:Rfer_3270 NADH dehydrogenase (quinone).
    
 
 0.773
Pnap_1911
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pol:Bpro_2961 acyl-CoA dehydrogenase-like.
 
 
 0.766
Pnap_3224
PFAM: acyl-CoA dehydrogenase domain protein; KEGG: pol:Bpro_3845 acyl-CoA dehydrogenase-like.
 
 
 0.749
Pnap_1842
PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: pol:Bpro_2573 3-hydroxyacyl-CoA dehydrogenase, NAD-binding.
 
 0.704
Pnap_3225
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pol:Bpro_3846 acyl-CoA dehydrogenase-like.
 
 
 0.629
Pnap_1839
Amino acid/amide ABC transporter membrane protein 2, HAAT family; PFAM: inner-membrane translocator; KEGG: pol:Bpro_2576 inner-membrane translocator; TC 3.A.1.4.-; Belongs to the binding-protein-dependent transport system permease family.
 
     0.628
Pnap_3477
PFAM: acyl-CoA dehydrogenase domain protein; KEGG: pol:Bpro_3957 acyl-CoA dehydrogenase-like.
 
 
 0.616
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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