STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_1924PFAM: Biopolymer transport protein ExbD/TolR; KEGG: pol:Bpro_2948 biopolymer transport protein ExbD/TolR. (144 aa)    
Predicted Functional Partners:
Pnap_1925
PFAM: MotA/TolQ/ExbB proton channel; KEGG: pol:Bpro_2947 MotA/TolQ/ExbB proton channel.
 
 
 0.982
Pnap_3406
TIGRFAM: TonB family protein; KEGG: pol:Bpro_1088 TonB-like.
 
 
 0.796
lpxK
lipid-A-disaccharide kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).
 
    0.781
Pnap_1922
PFAM: protein of unknown function DUF343; KEGG: pol:Bpro_2950 protein of unknown function DUF343; Belongs to the UPF0434 family.
       0.730
tolQ
Cell division and transport-associated protein TolQ; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
 
 0.690
Pnap_3788
PFAM: MotA/TolQ/ExbB proton channel; KEGG: pol:Bpro_4607 MotA/TolQ/ExbB proton channel.
 
 
 0.690
kdsB
3-deoxy-D-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.
       0.682
Pnap_2569
Outer membrane transport energization protein ExbB; PFAM: MotA/TolQ/ExbB proton channel; KEGG: pol:Bpro_3052 MotA/TolQ/ExbB proton channel; TC 2.C.1.1.1.
 
 
 0.663
Pnap_1012
KEGG: pol:Bpro_1428 hypothetical protein.
  
 
 0.535
Pnap_2568
Outer membrane transport energization protein TonB; TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: pol:Bpro_3051 TonB-like; TC 2.C.1.1.1.
  
 
 0.535
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.