STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_1931Hypothetical protein; KEGG: bxe:Bxe_A3769 putative transposase. (100 aa)    
Predicted Functional Partners:
Pnap_1750
PFAM: Integrase, catalytic region; transposase IS3/IS911 family protein; KEGG: pol:Bpro_0339 integrase, catalytic region.
 
  
 0.783
Pnap_0429
PFAM: Integrase, catalytic region; KEGG: gox:GOX2195 transposase (class III).
 
  
 0.774
Pnap_1932
PFAM: RNP-1 like RNA-binding protein; KEGG: pol:Bpro_0624 RNA-binding region RNP-1 (RNA recognition motif).
       0.486
Pnap_0430
PFAM: transposase IS3/IS911 family protein; KEGG: sat:SYN_03173 transposase.
 
  
 0.475
Pnap_1930
TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: pol:Bpro_2942 isocitrate dehydrogenase, NADP-dependent.
       0.460
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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