STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_2025PFAM: aldo/keto reductase; KEGG: rfr:Rfer_0302 aldo/keto reductase. (334 aa)    
Predicted Functional Partners:
Pnap_2026
4-carboxy-2-hydroxymuconate semialdehyde dehydrogenase; PFAM: oxidoreductase domain protein; KEGG: rfr:Rfer_0329 oxidoreductase-like.
 
  
 0.735
Pnap_2029
PFAM: amidohydrolase 2; KEGG: rfr:Rfer_0332 amidohydrolase 2.
 
  
 0.685
Pnap_2028
Protocatechuate 4,5-dioxygenase alpha subunit; PFAM: Extradiol ring-cleavage dioxygenase LigAB, LigA subunit; KEGG: rfr:Rfer_0331 protocatechuate 4,5-dioxygenase.
 
   
 0.669
Pnap_2027
Protocatechuate 4,5-dioxygenase beta subunit; PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; KEGG: rfr:Rfer_0330 protocatechuate 4,5-dioxygenase.
 
   
 0.648
Pnap_2032
4-oxalomesaconate hydratase; PFAM: amidohydrolase 2; KEGG: pol:Bpro_4320 amidohydrolase 2.
 
    0.611
Pnap_2030
PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_1232 uncharacterized protein UPF0065.
       0.492
Pnap_2031
4-carboxy-4-hydroxy-2-oxoadipate aldolase; PFAM: Dimethylmenaquinone methyltransferase; KEGG: rpb:RPB_0876 dimethylmenaquinone methyltransferase.
  
    0.460
Pnap_2033
Methylitaconate delta2-delta3-isomerase; PFAM: protein of unknown function DUF453; KEGG: rpb:RPB_0878 protein of unknown function DUF453.
       0.447
Pnap_2034
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rfr:Rfer_0341 transcriptional regulator, LysR family.
 
     0.405
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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