STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_2028Protocatechuate 4,5-dioxygenase alpha subunit; PFAM: Extradiol ring-cleavage dioxygenase LigAB, LigA subunit; KEGG: rfr:Rfer_0331 protocatechuate 4,5-dioxygenase. (150 aa)    
Predicted Functional Partners:
Pnap_2027
Protocatechuate 4,5-dioxygenase beta subunit; PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; KEGG: rfr:Rfer_0330 protocatechuate 4,5-dioxygenase.
 
 0.999
Pnap_2733
Protocatechuate 4,5-dioxygenase beta subunit; PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; KEGG: rfr:Rfer_0294 protocatechuate 4,5-dioxygenase.
 
 0.999
Pnap_2026
4-carboxy-2-hydroxymuconate semialdehyde dehydrogenase; PFAM: oxidoreductase domain protein; KEGG: rfr:Rfer_0329 oxidoreductase-like.
 
  
 0.995
Pnap_2029
PFAM: amidohydrolase 2; KEGG: rfr:Rfer_0332 amidohydrolase 2.
 
  
 0.995
Pnap_2734
Protocatechuate 4,5-dioxygenase alpha subunit; PFAM: Extradiol ring-cleavage dioxygenase LigAB, LigA subunit; KEGG: rfr:Rfer_0295 extradiol ring-cleavage dioxygenase LigAB, LigA subunit.
 
 
0.979
Pnap_2033
Methylitaconate delta2-delta3-isomerase; PFAM: protein of unknown function DUF453; KEGG: rpb:RPB_0878 protein of unknown function DUF453.
 
  
 0.971
Pnap_2725
PFAM: Rieske [2Fe-2S] domain protein; KEGG: rfr:Rfer_0280 Rieske (2Fe-2S) protein.
 
  
 0.952
Pnap_1901
KEGG: rfr:Rfer_0339 4-hydroxybenzoate 3-monooxygenase; TIGRFAM: 4-hydroxybenzoate 3-monooxygenase; PFAM: monooxygenase, FAD-binding.
 
  
 0.939
Pnap_2032
4-oxalomesaconate hydratase; PFAM: amidohydrolase 2; KEGG: pol:Bpro_4320 amidohydrolase 2.
 
   
 0.937
Pnap_2724
PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: rfr:Rfer_0281 ferredoxin.
  
  
 0.918
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.