STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_2067PFAM: PfkB domain protein; KEGG: bcn:Bcen_6346 PfkB. (324 aa)    
Predicted Functional Partners:
Pnap_1487
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: epimerase KguE, putative.
  
 0.953
Pnap_2068
PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain; KEGG: bcn:Bcen_6467 altronate dehydratase.
 
  
 0.915
Pnap_2985
KEGG: pol:Bpro_3550 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase.
 
 0.893
Pnap_2069
PFAM: Mannitol dehydrogenase, C-terminal domain; KEGG: atc:AGR_C_5101 altronate oxidoreductase.
 
   
 0.764
Pnap_2070
PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bcn:Bcen_6469 alcohol dehydrogenase GroES-like.
 
  
 0.749
Pnap_1493
Transcriptional regulator, LacI family; PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: pol:Bpro_1738 transcriptional regulator, LacI family.
 
  
 0.735
Pnap_1485
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: pol:Bpro_1736 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding.
 
  
 0.558
hisA
1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: histidine biosynthesis; KEGG: pol:Bpro_0808 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase.
  
    0.533
Pnap_0224
PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein, LacI; KEGG: bcn:Bcen_4095 transcriptional regulator, LacI family.
 
  
 0.507
Pnap_2071
Amino acid ABC transporter substrate-binding protein, PAAT family; PFAM: extracellular solute-binding protein, family 3; KEGG: rfr:Rfer_1029 extracellular solute-binding protein, family 3; TC 3.A.1.3.-.
  
    0.502
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.