STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_2105KEGG: bxe:Bxe_A1407 hypothetical protein. (160 aa)    
Predicted Functional Partners:
Pnap_2103
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: bxe:Bxe_A1409 hypothetical protein.
 
   
 0.953
Pnap_2101
PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: bxe:Bxe_A1411 putative thiamine-monophosphate kinase.
 
   
 0.950
Pnap_2102
PFAM: GCN5-related N-acetyltransferase; KEGG: bxe:Bxe_A1410 hypothetical protein.
 
   
 0.948
Pnap_2104
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: bxe:Bxe_A1408 putative nitrilase.
 
     0.947
Pnap_2100
PFAM: glycosyl transferase, group 1; KEGG: bxe:Bxe_A1412 putative glycosyl transferases group 1.
 
   
 0.937
Pnap_2099
KEGG: bxe:Bxe_A1413 hypothetical protein.
 
   
 0.918
Pnap_2098
PFAM: FAD dependent oxidoreductase; KEGG: bxe:Bxe_A1414 hypothetical protein.
 
   
 0.885
Pnap_2106
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: bxe:Bxe_A1406 transcriptional regulator, GntR family.
 
     0.778
Pnap_2097
Hypothetical protein.
       0.536
Pnap_2094
PFAM: cytochrome c, class I; KEGG: pol:Bpro_3449 cytochrome c, class I.
     
 0.447
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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